updated to version 0.0.4

.Rbuildignore

@@ -30,3 +30,4 @@
 ^ci$
 ^doc$
 ^Meta$
+^\.vscode$

.gitignore

@@ -31,3 +31,5 @@ vignettes/.build.timestamp
 doc
 Meta
 !/.gitlab-ci.yml
+!/*.Rproj
+/.vscode

DESCRIPTION

 Package: sigident
 Title: Signature Analyses in Genomic Expression Sets
-Version: 0.0.3.9002
+Version: 0.0.4
 Authors@R: 
     c(person(given = "Lorenz A.",
              family = "Kapsner",
@@ -23,7 +23,7 @@ URL: https://gitlab.miracum.org/clearly/sigident
 BugReports: https://gitlab.miracum.org/clearly/sigident/issues
 Encoding: UTF-8
 VignetteBuilder: knitr
-Date: 2020-03-02
+Date: 2020-03-24
 biocViews: 
 Imports: 
     data.table,
@@ -52,6 +52,6 @@ Suggests:
     qpdf,
     lintr
 Remotes: 
-    url::https://gitlab.miracum.org/clearly/sigident.preproc/-/archive/development/sigident.preproc-development.zip,
-    url::https://gitlab.miracum.org/clearly/sigident.func/-/archive/master/sigident.func-master.zip
-RoxygenNote: 7.0.2
+    url::https://gitlab.miracum.org/clearly/sigident.preproc/-/archive/v0.0.3/sigident.preproc-v0.0.3.zip,
+    url::https://gitlab.miracum.org/clearly/sigident.func/-/archive/v0.0.2/sigident.func-v0.0.2.zip
+RoxygenNote: 7.1.0

data-raw/devstuffs.R

@@ -19,7 +19,7 @@ my_desc$del("Maintainer")
 # Vignette Builder
 my_desc$set("VignetteBuilder" = "knitr")
 # Set the version
-my_desc$set_version("0.0.3.9002")
+my_desc$set_version("0.0.4")
 # The title of your package
 my_desc$set(Title = "Signature Analyses in Genomic Expression Sets")
 # The description of your package
@@ -90,9 +90,9 @@ usethis::use_package("knitr", type = "Suggests")
 usethis::use_package("lintr", type = "Suggests")
 
 # Development package
-mytag <- "development"
+mytag <- "v0.0.3"
 devtools::install_git(url = "https://gitlab.miracum.org/clearly/sigident.preproc", ref = mytag, upgrade = "always")
-mytag2 <- "master"
+mytag2 <- "v0.0.2"
 devtools::install_git(url = "https://gitlab.miracum.org/clearly/sigident.func", ref = mytag2, upgrade = "always")
 # https://cran.r-project.org/web/packages/devtools/vignettes/dependencies.html
 desc::desc_set_remotes(c(
@@ -129,6 +129,7 @@ usethis::use_build_ignore("Readme.md")
 usethis::use_build_ignore("infos.R")
 usethis::use_build_ignore(".gitlab-ci.yml")
 usethis::use_build_ignore("ci")
+usethis::use_build_ignore(".vscode")
 usethis::use_git_ignore("inst/application/data")
 usethis::use_git_ignore("data")
 usethis::use_git_ignore("vignettes/geodata")
@@ -140,7 +141,7 @@ usethis::use_git_ignore("!/.gitlab-ci.yml")
 usethis::use_git_ignore("geodata")
 usethis::use_git_ignore("csv")
 usethis::use_git_ignore("plots")
-usethis::use_git_ignore("*.Rproj")
+usethis::use_git_ignore("!/*.Rproj")
 usethis::use_git_ignore(".Rproj*")
 usethis::use_git_ignore(".Rhistory")
 usethis::use_git_ignore(".RData")
@@ -155,3 +156,4 @@ usethis::use_git_ignore("vignettes/figure")
 usethis::use_git_ignore("vignettes/tables")
 usethis::use_git_ignore("tables")
 usethis::use_git_ignore("vignettes/.build.timestamp")
+usethis::use_git_ignore("/.vscode")

sigident.Rproj

+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
+
+AutoAppendNewline: Yes
+StripTrailingWhitespace: Yes
+
+BuildType: Package
+PackageUseDevtools: Yes
+PackageInstallArgs: --no-multiarch --with-keep.source
+PackageBuildArgs: --no-build-vignettes
+PackageCheckArgs: --no-vignettes
+PackageRoxygenize: rd,collate,namespace