updated readme

.gitlab-ci.yml

@@ -50,6 +50,12 @@ build_base_image:
     changes:
       - "data-raw/devstuffs.R"
       - "ci/Dockerfile"
+    refs:
+      - master
+      - development
+  except:
+    refs:
+      - tags
 
 check_package:
   stage: build
@@ -61,6 +67,13 @@ check_package:
       - "${CI_PROJECT_DIR}/ci/*.Rcheck"
     when: on_failure # upload check artifacts when job fails!
     expire_in: 1 week
+  except:
+    refs:
+      - tags
+  only:
+    refs:
+      - master
+      - development
 
 create_manual:
   stage: build
@@ -71,6 +84,13 @@ create_manual:
     paths:
       - "${CI_PROJECT_DIR}/ci/*.pdf"
     expire_in: 1 week
+  except:
+    refs:
+      - tags
+  only:
+    refs:
+      - master
+      - development
 
 build_source:
   stage: build
@@ -80,6 +100,13 @@ build_source:
     paths:
       - "${CI_PROJECT_DIR}/ci/*.tar.gz"
     expire_in: 1 week
+  except:
+    refs:
+      - tags
+  only:
+    refs:
+      - master
+      - development
 
 build_binary:
   stage: build
@@ -89,6 +116,13 @@ build_binary:
     paths:
       - "${CI_PROJECT_DIR}/ci/*.tar.gz"
     expire_in: 1 week
+  except:
+    refs:
+      - tags
+  only:
+    refs:
+      - master
+      - development
 
 testing:
   stage: test
@@ -100,6 +134,13 @@ testing:
   artifacts:
     paths:
       - public
+  except:
+    refs:
+      - tags
+  only:
+    refs:
+      - master
+      - development
 
 #check_errors:
 #  stage: check
@@ -120,6 +161,13 @@ install:
   stage: deploy
   script:
     - R -e "devtools::install(pkg = '.', upgrade = 'always')"
+  except:
+    refs:
+      - tags
+  only:
+    refs:
+      - master
+      - development
 
 compile_vignette:
   stage: vignette
@@ -133,3 +181,10 @@ compile_vignette:
     when: always
     expire_in: 1 week
     expire_in: 1 month
+  except:
+    refs:
+      - tags
+  only:
+    refs:
+      - master
+      - development

DESCRIPTION

 Package: sigident
 Title: Signature Analyses in Genomic Expression Sets
-Version: 0.0.2.9000
+Version: 0.0.3.9000
 Authors@R: 
     c(person(given = "Lorenz A.",
              family = "Kapsner",
@@ -23,7 +23,7 @@ URL: https://gitlab.miracum.org/clearly/sigident
 BugReports: https://gitlab.miracum.org/clearly/sigident/issues
 Encoding: UTF-8
 VignetteBuilder: knitr
-Date/Publication: 2019-12-05 08:30:02 UTC
+Date/Publication: 2019-12-05 15:24:52 UTC
 biocViews: 
 Imports: 
     data.table,
@@ -60,6 +60,5 @@ Suggests:
     rmarkdown,
     qpdf,
     lintr
-Remotes: 
+Remotes:  
     url::https://gitlab.miracum.org/clearly/sigident.preproc/-/archive/v0.0.1/clearly/sigident.preproc-v0.0.1.zip
-RoxygenNote: 7.0.1

Readme.md

@@ -9,7 +9,7 @@ This is the repository of the R package 'sigident'. It provides core functionali
 
 Currently implemented features are:
 
-- merging of microarray datasets
+- merging of microarray datasets (via the R package `sigident.preproc`)
 - DEG analysis
 - functional analysis (gene enrichment)
 - Identification of diagnostic signatures, using

data-raw/devstuffs.R

@@ -19,7 +19,7 @@ my_desc$del("Maintainer")
 # Vignette Builder
 my_desc$set("VignetteBuilder" = "knitr")
 # Set the version
-my_desc$set_version("0.0.2.9000")
+my_desc$set_version("0.0.3.9000")
 # The title of your package
 my_desc$set(Title = "Signature Analyses in Genomic Expression Sets")
 # The description of your package