Commit 3bc1a9ff authored by Lorenz Kapsner's avatar Lorenz Kapsner

updated deployment; updated descr

parent fea134dc
Pipeline #11142 passed with stages
in 12 minutes and 30 seconds
Package: kosmicGUI Package: kosmicGUI
Title: GUI for Reference Interval Estimation Title: GUI for Reference Interval Estimation
Version: 0.0.6.9002 Version: 0.0.7
Authors@R: Authors@R:
c(person(given = "Lorenz A.", c(person(given = "Lorenz A.",
family = "Kapsner", family = "Kapsner",
...@@ -11,14 +11,16 @@ Authors@R: ...@@ -11,14 +11,16 @@ Authors@R:
family = "Zierk", family = "Zierk",
role = "aut"), role = "aut"),
person(given = "Universitätsklinikum Erlangen", person(given = "Universitätsklinikum Erlangen",
role = "cph")) role = "cph"),
person(given = "MIRACUM - Medical Informatics in Research and Care in University Medicine",
role = "fnd"))
Description: Graphical User Interface (GUI) for Reference Interval Estimation from Mixed Distributions using Truncation Points and the Kolmogorov-Smirnov Distance. Description: Graphical User Interface (GUI) for Reference Interval Estimation from Mixed Distributions using Truncation Points and the Kolmogorov-Smirnov Distance.
License: GPL-3 License: GPL-3
LazyData: true LazyData: true
URL: https://gitlab.miracum.org/ume-labor/kosmicr URL: https://gitlab.miracum.org/ume-labor/kosmicr
BugReports: https://gitlab.miracum.org/ume-labor/kosmicr/issues BugReports: https://gitlab.miracum.org/ume-labor/kosmicr/issues
Encoding: UTF-8 Encoding: UTF-8
Date/Publication: 2020-06-05 09:27:48 UTC Date/Publication: 2020-06-18 07:35:25 UTC
Depends: Depends:
R (>= 2.10) R (>= 2.10)
Imports: Imports:
......
...@@ -10,14 +10,15 @@ my_desc$set("Package", packagename) ...@@ -10,14 +10,15 @@ my_desc$set("Package", packagename)
my_desc$set_authors(c( my_desc$set_authors(c(
person("Lorenz A.", "Kapsner", email = "lorenz.kapsner@uk-erlangen.de", role = c('cre', 'aut'), person("Lorenz A.", "Kapsner", email = "lorenz.kapsner@uk-erlangen.de", role = c('cre', 'aut'),
comment = c(ORCID = "0000-0003-1866-860X")), comment = c(ORCID = "0000-0003-1866-860X")),
person("Jakob", "Zierk", role = c('aut')), person("Jakob", "Zierk", role = 'aut'),
person("Universitätsklinikum Erlangen", role = "cph") person("Universitätsklinikum Erlangen", role = "cph"),
person("MIRACUM - Medical Informatics in Research and Care in University Medicine", role = "fnd")
)) #, )) #,
# person("Name2", "Surname2", email = "mail@2", role = 'aut'))) # person("Name2", "Surname2", email = "mail@2", role = 'aut')))
# Remove some author fields # Remove some author fields
my_desc$del("Maintainer") my_desc$del("Maintainer")
# Set the version # Set the version
my_desc$set_version("0.0.6.9002") my_desc$set_version("0.0.7")
# The title of your package # The title of your package
my_desc$set(Title = "GUI for Reference Interval Estimation") my_desc$set(Title = "GUI for Reference Interval Estimation")
# The description of your package # The description of your package
......
...@@ -106,4 +106,8 @@ RUN chown -R ${RSESSION_USER}:${RSESSION_USER} /srv/shiny-server/ ...@@ -106,4 +106,8 @@ RUN chown -R ${RSESSION_USER}:${RSESSION_USER} /srv/shiny-server/
RUN chown -R ${RSESSION_USER}:${RSESSION_USER} /home/user/ RUN chown -R ${RSESSION_USER}:${RSESSION_USER} /home/user/
RUN chmod +x show-log.sh RUN chmod +x show-log.sh
CMD ["/usr/bin/shiny-server"] # https://stackoverflow.com/questions/51080857/preserve-environment-variables-when-spawning-shiny-processes-within-a-container?rq=1
ENTRYPOINT env >> /home/${RSESSION_USER}/.Renviron && \
chown ${RSESSION_USER}.${RSESSION_USER} /home/${RSESSION_USER}/.Renviron && \
/usr/bin/shiny-server
...@@ -3,7 +3,7 @@ version: '3' ...@@ -3,7 +3,7 @@ version: '3'
services: services:
kosmic: kosmic:
container_name: kosmic_container container_name: kosmic_container
image: docker.miracum.org/kosmic/kosmic_img:0.0.6 image: docker.miracum.org/kosmic/kosmic_img:development
restart: unless-stopped restart: unless-stopped
ports: ports:
- "3839:3838" - "3839:3838"
......
...@@ -3,7 +3,7 @@ version: '3' ...@@ -3,7 +3,7 @@ version: '3'
services: services:
kosmic: kosmic:
container_name: kosmic_container container_name: kosmic_container
image: docker.miracum.org/kosmic/kosmic_img:0.0.6 image: docker.miracum.org/kosmic/kosmic_img:0.0.7
restart: unless-stopped restart: unless-stopped
ports: ports:
- "3838:3838" - "3838:3838"
......
version: '3.7'
services:
kosmic:
image: docker.miracum.org/kosmic/kosmic_img:0.0.6
restart: unless-stopped
deploy:
replicas: 1
labels:
- traefik.enable=true
- traefik.docker.network=traefik
- traefik.frontend.rule=Host:${HOST_NAME};PathPrefixStrip:/kosmic/
- traefik.port=3838
networks:
- default
- traefik
networks:
traefik:
external: true
# deploy to stack:
# sudo HOST_NAME=your.hostname.org docker stack deploy --compose-file docker-compose.swarm.yml kosmic
#!/bin/bash #!/bin/bash
sh deploy_image.sh docker.miracum.org/kosmic kosmic_img 0.0.6 sh deploy_image.sh docker.miracum.org/kosmic kosmic_img 0.0.7
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