added some comments to python

DESCRIPTION

@@ -34,3 +34,11 @@ Imports:
     shiny,
     shinydashboard,
     utils
+Remotes: 
+    url::https://gitlab.miracum.org/miracum/dqa/dqagui/-/archive/developmment/dqagui-developmment.zip,
+    url::https://gitlab.miracum.org/miracum/dqa/dqastats/-/archive/development/dqastats-development.zip
+Suggests: 
+    markdown,
+    lintr,
+    processx,
+    testthat

inst/application/_utilities/SQL/create_i2b2.py

@@ -6,7 +6,9 @@ import os
 class CreateSQL():
   
   def __init__(self):
-    
+    """
+    Instantiate some basics.
+    """
     self.base_dir = os.path.abspath(os.path.dirname(__file__))
     json_file = "SQL_i2b2.JSON"
     
@@ -19,7 +21,9 @@ class CreateSQL():
     self.json_dict = {}
   
   def __call__(self):
-    
+    """
+    Our main function.
+    """
     self.create_dict()
   
     with open(self.json_path, "w") as outfile:
@@ -32,7 +36,11 @@ class CreateSQL():
   
   
   def create_dict(self):
+    """
+    Create dictionary to dump to JSON file here.
     
+    TODO: add some logic to use mappings from MDR.CSV
+    """
     self.json_dict["dt.patient"] = "SELECT\n\tpatient_num\tAS\t\"patient_identifier_value\"\nFROM\n\ti2b2miracum.patient_dimension\nORDER BY\n\tpatient_num;"
     self.json_dict["dt.gender"] = "SELECT\n\tconcept_cd\tAS\t\"encounter_subject_patient_gender\",\npatient_num\tAS\t\"encounter_subject_patient_identifier_value\"\nFROM\n\ti2b2miracum.observation_fact\nWHERE\n\tconcept_cd LIKE 'DEM|GESCHLECHT%'\nORDER BY\n\tpatient_num;"
     self.json_dict["dt.zipcode"] = "SELECT\n\tpatient_num\tAS\t\"patient_identifier_value\",\nzip_cd\tAS\t\"patient_address_postalCode\"\nFROM\n\ti2b2miracum.patient_dimension\nORDER BY\n\tpatient_num;"
@@ -55,9 +63,6 @@ class CreateSQL():
     self.json_dict["dt.laboratory"] = "SELECT\n\tconcept_cd\tAS\t\"observation_code_coding_code\",\nencounter_num\tAS\t\"encounter_identifier_value\"\nFROM\n\ti2b2miracum.observation_fact\nWHERE\n\tconcept_cd LIKE 'LOINC%';"
 
 
-	
-	
-
 if __name__ == "__main__":
   csql = CreateSQL()
   csql()