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MIRACUM
dqa
DQAgui
Commits
f9da6f35
Commit
f9da6f35
authored
2 years ago
by
Jonathan Mang
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chore: updated image to R 4.2.0
parent
283a1043
master
colored_diff_summary
development
development-Differences
fix_settings_from_env
lab-module
latest
time_compare_fix
trino
v0.2.4
v0.2.3
v0.2.2
v0.2.1
No related merge requests found
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5 changed files
.Rbuildignore
+1
-0
.Rbuildignore
.gitignore
+1
-0
.gitignore
data-raw/debugging_info.R
+15
-10
data-raw/debugging_info.R
docker/.env
+1
-1
docker/.env
docker/Dockerfile
+1
-1
docker/Dockerfile
with
19 additions
and
12 deletions
+19
-12
.Rbuildignore
+
1
-
0
View file @
f9da6f35
...
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@@ -15,3 +15,4 @@
^CRAN-RELEASE$
^CRAN-SUBMISSION$
^dqagui\.Rproj$
^\.Rproj\.user$
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.gitignore
+
1
-
0
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f9da6f35
...
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@@ -34,3 +34,4 @@
!/docker/app.R
!/docker/shiny-server.conf
!/docker/show-log.sh
.Rproj.user
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data-raw/debugging_info.R
+
15
-
10
View file @
f9da6f35
# remotes::install_git(url = "https://gitlab.miracum.org/miracum/misc/diztools", ref = "dev")
# remotes::install_git(url = "https://gitlab.miracum.org/miracum/misc/dizutils", ref = "development")
# remotes::install_git(url = "https://gitlab.miracum.org/miracum/dqa/dqastats", ref = "development")
# remotes::install_git(url = "https://gitlab.miracum.org/miracum/dqa/dqagui", ref = "development")
# install.packages("DIZtools")
# install.packages("DIZutils")
# install.packages("DQAstats")
...
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@@ -11,19 +16,19 @@ output_dir = "output/"
## debugging the MIRACUM stuff (JM):
## ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓
#
utils_path = DIZtools::clean_path_name(system.file("application/_utilities",
#
package = "miRacumDQA"))
#
mdr_filename = "mdr.csv"
#
logfile_dir = "~/share/logfiles/"
utils_path
=
DIZtools
::
clean_path_name
(
system.file
(
"application/_utilities"
,
package
=
"miRacumDQA"
))
mdr_filename
=
"mdr.csv"
logfile_dir
=
"~/share/logfiles/"
## ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑
## debugging the MIRACUM stuff (LK):
## ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓ ↓
utils_path
=
DIZtools
::
clean_path_name
(
system.file
(
"application/_utilities"
,
package
=
"miRacumDQA"
))
mdr_filename
=
"mdr.csv"
logfile_dir
<-
tempdir
()
#
utils_path = DIZtools::clean_path_name(system.file("application/_utilities",
#
package = "miRacumDQA"))
#
mdr_filename = "mdr.csv"
#
logfile_dir <- tempdir()
## ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑
...
...
@@ -54,8 +59,8 @@ ncores = 4
DIZtools
::
setenv_file
(
paste0
(
"../"
,
list.files
(
path
=
"../"
,
pattern
=
"^env_INTERNAL.*"
)
#
list.files(path = "../", pattern = "dev.env")
#
list.files(path = "../", pattern = "^env_INTERNAL.*")
list.files
(
path
=
"../"
,
pattern
=
"dev.env"
)
)
)
# shiny::shinyAppDir("inst/application/")
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docker/.env
+
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1
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f9da6f35
REGISTRY_PREFIX2=harbor.miracum.org/dqa
REGISTRY_PREFIX=ghcr.io/miracum
IMAGE_NAME=dqagui
IMAGE_TAG=4.
1.3
IMAGE_TAG=4.
2.0
## ----------------
## Demo data:
...
...
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docker/Dockerfile
+
1
-
1
View file @
f9da6f35
FROM
rocker/shiny-verse:4.
1.3
FROM
rocker/shiny-verse:4.
2.0
ENV
DEBIAN_FRONTEND=noninteractive \
JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64
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