TIMESTAMP

1643ef99 · Sude Eda Kocman · 441c0c6e · 1643ef99 · 1643ef99
Commit 1643ef99 authored 7 months ago by Sude Eda Kocman
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with 4 additions and 4 deletions
+4 -4
--- a/inst/application/_utilities/SQL/SQL_i2b2trinetx.JSON
+++ b/inst/application/_utilities/SQL/SQL_i2b2trinetx.JSON
@@ -6,7 +6,7 @@
  "Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator": "SELECT r1.patient_num AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\" FROM ( SELECT * FROM ( SELECT patient_num, birth_date AS i2b2trinetx_start_date FROM i2b2.i2b2trinetx.patient_dimension ) AS r_intermediate) r1;",
  "Fall.Versorgungsstellenkontakt.Beginndatum": "SELECT r1.encounter_num AS \"Fall.Versorgungsstellenkontakt.Aufnahmenummer\", r1.i2b2trinetx_start_date AS \"Fall.Versorgungsstellenkontakt.Beginndatum\" FROM ( SELECT * FROM ( SELECT encounter_num, start_date AS i2b2trinetx_start_date FROM i2b2.i2b2trinetx.visit_dimension ) AS r_intermediate) r1;",
  "Fall.Versorgungsstellenkontakt.Enddatum": "SELECT r1.encounter_num AS \"Fall.Versorgungsstellenkontakt.Aufnahmenummer\", r1.end_date AS \"Fall.Versorgungsstellenkontakt.Enddatum\" FROM ( SELECT * FROM ( SELECT encounter_num, start_date AS i2b2trinetx_start_date, end_date FROM i2b2.i2b2trinetx.visit_dimension ) AS r_intermediate) r1;",
-  "Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode": "SELECT r1.patient_num AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.concept_cd AS \"Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode\" FROM ( SELECT * FROM ( SELECT patient_num, concept_cd, start_date AS i2b2trinetx_start_date FROM i2b2.i2b2trinetx.observation_fact WHERE concept_cd LIKE 'ICD10:%' ) AS r_intermediate) r1 WHERE r1.concept_cd IS NOT NULL;",
-  "Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode": "SELECT r1.patient_num AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.concept_cd AS \"Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode\" FROM ( SELECT * FROM ( SELECT patient_num, concept_cd, start_date AS i2b2trinetx_start_date FROM i2b2.i2b2trinetx.observation_fact WHERE concept_cd LIKE 'OPS:%' ) AS r_intermediate) r1 WHERE r1.concept_cd IS NOT NULL;",
+  "Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode": "SELECT r1.patient_num AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.concept_cd AS \"Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode\", r1.i2b2trinetx_start_date AS \"Diagnosen.Zeitstempel\" FROM ( SELECT * FROM ( SELECT patient_num, concept_cd, start_date AS i2b2trinetx_start_date FROM i2b2.i2b2trinetx.observation_fact WHERE concept_cd LIKE 'ICD10:%' ) AS r_intermediate) r1 WHERE r1.concept_cd IS NOT NULL;",
+  "Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode": "SELECT r1.patient_num AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.concept_cd AS \"Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode\", r1.i2b2trinetx_start_date AS \"TIMESTAMP\" FROM ( SELECT * FROM ( SELECT patient_num, concept_cd, start_date AS i2b2trinetx_start_date FROM i2b2.i2b2trinetx.observation_fact WHERE concept_cd LIKE 'OPS:%' ) AS r_intermediate) r1 WHERE r1.concept_cd IS NOT NULL;",
  "Laborbefund.Laboruntersuchung.Code": "SELECT r1.patient_num AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.concept_cd AS \"Laborbefund.Laboruntersuchung.Code\" FROM ( SELECT * FROM ( SELECT patient_num, concept_cd, start_date AS i2b2trinetx_start_date FROM i2b2.i2b2trinetx.observation_fact WHERE concept_cd LIKE 'LOINC:%' ) AS r_intermediate) r1 WHERE r1.concept_cd IS NOT NULL;"
 }
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--- a/inst/application/_utilities/SQL/SQL_trino.JSON
+++ b/inst/application/_utilities/SQL/SQL_trino.JSON
@@ -6,7 +6,7 @@
  "Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator": "SELECT r1.id_versioned AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\" FROM ( SELECT * FROM ( SELECT id_versioned, to_timestamp(birthdate, 'yyyy-mm-dd') AS trino_start_date FROM fhir.qs.patient ) AS r_intermediate) r1;",
  "Fall.Versorgungsstellenkontakt.Beginndatum": "SELECT r1.id AS \"Fall.Versorgungsstellenkontakt.Aufnahmenummer\", r1.trino_start_date AS \"Fall.Versorgungsstellenkontakt.Beginndatum\" FROM ( SELECT * FROM ( SELECT id, to_timestamp(substr(replace(period.start, 'T', ' '), 1, 19), 'yyyy-mm-dd hh24:mi:ss') AS trino_start_date FROM fhir.qs.encounter ) AS r_intermediate) r1;",
  "Fall.Versorgungsstellenkontakt.Enddatum": "SELECT r1.id AS \"Fall.Versorgungsstellenkontakt.Aufnahmenummer\", r1.trino_start_date AS \"Fall.Versorgungsstellenkontakt.Enddatum\" FROM ( SELECT * FROM ( SELECT id, to_timestamp(substr(replace(period.\"end\", 'T', ' '), 1, 19), 'yyyy-mm-dd hh24:mi:ss') AS trino_start_date FROM fhir.qs.encounter ) AS r_intermediate) r1;",
-  "Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode": "SELECT r1.patient_id AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.diagnose AS \"Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode\" FROM ( SELECT * FROM ( SELECT subject.reference AS patient_id, elem.code AS diagnose, to_timestamp(substr(replace(onsetdatetime, 'T', ' '), 1, 19), 'yyyy-mm-dd hh24:mi:ss') AS trino_start_date FROM fhir.qs.condition, UNNEST (code.coding) AS elem (id, system, version,code,display,userselected, _fid) WHERE elem.system = 'http://fhir.de/CodeSystem/bfarm/icd-10-gm' ) AS r_intermediate) r1 WHERE r1.diagnose IS NOT NULL;",
-  "Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode": "SELECT r1.patient_id AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.prozedur AS \"Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode\" FROM ( SELECT * FROM ( SELECT subject.reference AS patient_id, elem.code AS prozedur, to_timestamp(substr(replace(performeddatetime, 'T', ' '), 1, 19), 'yyyy-mm-dd hh24:mi:ss') AS trino_start_date FROM fhir.qs.procedure, UNNEST (code.coding) AS elem (id, system, version,code,display,userselected, _fid) WHERE elem.system = 'http://fhir.de/CodeSystem/bfarm/ops') AS r_intermediate) r1 WHERE r1.prozedur IS NOT NULL;",
+  "Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode": "SELECT r1.patient_id AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.diagnose AS \"Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode\", r1.trino_start_date AS \"Diagnose.Zeitstempel\"FROM ( SELECT * FROM ( SELECT subject.reference AS patient_id, elem.code AS diagnose, to_timestamp(substr(replace(onsetdatetime, 'T', ' '), 1, 19), 'yyyy-mm-dd hh24:mi:ss') AS trino_start_date FROM fhir.qs.condition, UNNEST (code.coding) AS elem (id, system, version,code,display,userselected, _fid) WHERE elem.system = 'http://fhir.de/CodeSystem/bfarm/icd-10-gm' ) AS r_intermediate) r1 WHERE r1.diagnose IS NOT NULL;",
+  "Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode": "SELECT r1.patient_id AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.prozedur AS \"Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode\", r1.trino_start_date AS \"TIMESTAMP\" FROM ( SELECT * FROM ( SELECT subject.reference AS patient_id, elem.code AS prozedur, to_timestamp(substr(replace(performeddatetime, 'T', ' '), 1, 19), 'yyyy-mm-dd hh24:mi:ss') AS trino_start_date FROM fhir.qs.procedure, UNNEST (code.coding) AS elem (id, system, version,code,display,userselected, _fid) WHERE elem.system = 'http://fhir.de/CodeSystem/bfarm/ops') AS r_intermediate) r1 WHERE r1.prozedur IS NOT NULL;",
  "Laborbefund.Laboruntersuchung.Code": "SELECT r1.patient_id AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\",r1.labor AS \"Laborbefund.Laboruntersuchung.Code\" FROM ( SELECT * FROM ( SELECT subject.reference AS patient_id, elem.code AS labor, to_timestamp(substr(replace(effectivedatetime, 'T', ' '), 1, 19), 'yyyy-mm-dd hh24:mi:ss') AS trino_start_date FROM fhir.qs.observation, UNNEST (code.coding) AS elem (id, system, version,code,display,userselected, _fid) WHERE elem.system = 'http://loinc.org') AS r_intermediate) r1 WHERE r1.labor IS NOT NULL;"
 }
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