fix: fixed utf8 typo

b301c25a · Lorenz Kapsner · 56102040 · b301c25a · b301c25a · b301c25a
Commit b301c25a authored 2 years ago by Lorenz Kapsner
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+6 -5
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -34,6 +34,7 @@ Imports:
    shiny,
    shinydashboard,
    utils
+RoxygenNote: 7.1.2
 Remotes: 
    github::miracum/misc-dizutils@development,
    url::https://gitlab.miracum.org/miracum/dqa/dqastats/-/archive/development/dqastats-development.zip,
@@ -43,4 +44,3 @@ Suggests:
    markdown,
    processx,
    testthat
-RoxygenNote: 7.1.2
--- a/NEWS.md
+++ b/NEWS.md
@@ -40,6 +40,7 @@
 * updated readme
 #### Others

+* updated misspelled urls from readme and description
 * removed unneeded dependencies; fixed subtitle in markdown
 * updated news.md
 * added error messages and feedback details
@@ -59,7 +60,7 @@
 * implementing new value_set (downstream to dqagui/dqastats)
 * creating news.md; allow in gitignore; addctoryed to rbuildignore

-Full set of changes: [`v2.1.2...965957c`](https://gitlab.miracum.org/miracum/dqa/miracumdqa/compare/v2.1.2...965957c)
+Full set of changes: [`v2.1.2...5610204`](https://gitlab.miracum.org/miracum/dqa/miracumdqa/compare/v2.1.2...5610204)

 ## v2.1.2 (2021-07-02)


--- a/inst/application/_utilities/SQL/SQL_fhir_gw.JSON
+++ b/inst/application/_utilities/SQL/SQL_fhir_gw.JSON
@@ -6,10 +6,10 @@
  "Fall.Einrichtungskontakt.Beginndatum": "SELECT r1.pid AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\", to_timestamp(jsonb_path_query(r1.jsonbdata, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS \"Fall.Einrichtungskontakt.Beginndatum\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, REPLACE(jsonb_path_query(DATA, '$.subject') ->> 'reference', 'Patient/', '') AS pid, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1;",
  "Fall.Einrichtungskontakt.Enddatum": "SELECT r1.pid AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\", to_timestamp(jsonb_path_query(r1.jsonbdata, '$.period') ->> 'end', 'YYYY-MM-DDTHH:MI:SS') AS \"Fall.Einrichtungskontakt.Enddatum\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, REPLACE(jsonb_path_query(DATA, '$.subject') ->> 'reference', 'Patient/', '') AS pid, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1;",
  "Person.Demographie.Adresse.Strassenanschrift.PLZ": "SELECT r1.pid AS \"Person.PatientIn.Patienten-Identifikator.Patienten-Identifikator\", jsonb_array_elements(jsonb_path_query(r2.jsonbdata2, '$.address')) ->> 'postalCode' AS \"Person.Demographie.Adresse.Strassenanschrift.PLZ\" FROM ( SELECT * FROM ( SELECT REPLACE(jsonb_path_query(DATA, '$.subject') ->> 'reference', 'Patient/', '') AS pid, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1, LATERAL ( SELECT DATA AS jsonbdata2 FROM resources WHERE TYPE = 'Patient' AND ( (DATA ->> 'id') = r1.pid) ) r2;",
-  "Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode": "SELECT r1.jsonbdata ->> 'id' AS \"Fall.Einrichtungskontakt.Aufnahmenummer\", jsonb_array_elements(jsonb_path_query(r2.jsonbdata2, '$.code.coding')) ->> 'code' AS \"Diagnose.ICD10GMDiagnoseKodiert.Vollstu00e4ndigerDiagnosecode\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1, LATERAL ( SELECT DATA AS jsonbdata2 FROM resources WHERE TYPE = 'Condition' AND ( REPLACE(DATA -> 'encounter' ->> 'reference', 'Encounter/', '') = (r1.jsonbdata ->> 'id') )) r2;",
+  "Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode": "SELECT r1.jsonbdata ->> 'id' AS \"Fall.Einrichtungskontakt.Aufnahmenummer\", jsonb_array_elements(jsonb_path_query(r2.jsonbdata2, '$.code.coding')) ->> 'code' AS \"Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1, LATERAL ( SELECT DATA AS jsonbdata2 FROM resources WHERE TYPE = 'Condition' AND ( REPLACE(DATA -> 'encounter' ->> 'reference', 'Encounter/', '') = (r1.jsonbdata ->> 'id') )) r2;",
  "Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode": "SELECT r1.jsonbdata ->> 'id' AS \"Fall.Einrichtungskontakt.Aufnahmenummer\", jsonb_array_elements(jsonb_path_query(r2.jsonbdata2, '$.code.coding')) ->> 'code' AS \"Prozedur.OPSProzedurKodiert.VollstaendigerProzedurenkode\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1, LATERAL ( SELECT DATA AS jsonbdata2 FROM resources WHERE TYPE = 'Procedure' AND ( REPLACE(DATA -> 'encounter' ->> 'reference', 'Encounter/', '') = (r1.jsonbdata ->> 'id') )) r2;",
  "Fall.Abteilungskontakt.Fachabteilungsschluessel": "SELECT r1.jsonbdata ->> 'id' AS \"Fall.Einrichtungskontakt.Aufnahmenummer\",  jsonb_array_elements(jsonb_path_query(r1.jsonbdata, '$.serviceType.coding')) ->> 'code' AS \"Fall.Abteilungskontakt.Fachabteilungsschluessel\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1;",
  "Fall.Einrichtungskontakt.Entlassungsgrund": "SELECT r1.jsonbdata ->> 'id' AS \"Fall.Einrichtungskontakt.Aufnahmenummer\",  jsonb_array_elements(jsonb_path_query(r1.jsonbdata, '$.hospitalization')) ->> 'dischargeDisposition' AS \"Fall.Einrichtungskontakt.Entlassungsgrund\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1;",
  "Fall.Einrichtungskontakt.Aufnahmeanlass": "SELECT r1.jsonbdata ->> 'id' AS \"Fall.Einrichtungskontakt.Aufnahmenummer\",  jsonb_array_elements(jsonb_path_query(r1.jsonbdata, '$.hospitalization')) ->> 'admitSource' AS \"Fall.Einrichtungskontakt.Aufnahmeanlass\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1;",
  "Fall.Einrichtungskontakt.Aufnahmegrund": "SELECT r1.jsonbdata ->> 'id' AS \"Fall.Einrichtungskontakt.Aufnahmenummer\",  r1.jsonbdata ->> 'reasonCode' AS \"Fall.Einrichtungskontakt.Aufnahmegrund\" FROM ( SELECT * FROM ( SELECT DATA AS jsonbdata, to_timestamp(jsonb_path_query(DATA, '$.period') ->> 'start', 'YYYY-MM-DDTHH:MI:SS') AS fhir_start_date FROM resources WHERE TYPE = 'Encounter') AS r_intermediate ) r1;"
-}
\ No newline at end of file
+}
--- a/inst/application/_utilities/SQL/create_fhir_gw.py
+++ b/inst/application/_utilities/SQL/create_fhir_gw.py
@@ -189,7 +189,7 @@ WHERE TYPE = 'Patient' AND ( \

    self.json_dict["Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode"] = "SELECT \
 r1.jsonbdata ->> 'id' AS \"Fall.Einrichtungskontakt.Aufnahmenummer\", \
-jsonb_array_elements(jsonb_path_query(r2.jsonbdata2, '$.code.coding')) ->> 'code' AS \"Diagnose.ICD10GMDiagnoseKodiert.Vollstu00e4ndigerDiagnosecode\" \
+jsonb_array_elements(jsonb_path_query(r2.jsonbdata2, '$.code.coding')) ->> 'code' AS \"Diagnose.ICD10GMDiagnoseKodiert.VollstaendigerDiagnosekode \" \
 FROM ( SELECT * FROM ( \
 SELECT \
 DATA AS jsonbdata, \