Skip to content

GitLab

Merged
Created by Marvin Kampf@kampfmnOwner

fix: add leading zero to admission reason code in test data

Compare
and
10 files
+ 34
- 29
fhi‎r-gw‎
docker-co‎mpose.yml‎ +8 -5
fhir-t‎o-i2b2‎
docker-co‎mpose.yml‎ +1 -1
lab-t‎o-fhir‎
docker-co‎mpose.yml‎ +1 -1
monit‎oring‎
docker-co‎mpose.yml‎ +1 -1
p21-t‎o-fhir‎
docker-co‎mpose.yml‎ +5 -2
stagi‎ng-db‎
docker-entryp‎oint-initdb.d‎
03-add-tes‎t-data.sql‎ +9 -9
docker-co‎mpose.yml‎ +1 -1
.giti‎gnore‎ +3 -0
READ‎ME.md‎ +4 -2
startTestEn‎vironment.sh‎ +1 -7
fhir-gw/docker-compose.yml
+ 8
- 5
@@ -2,7 +2,7 @@ version: "3.7"
services:
fhir-gateway:
image: docker.miracum.org/miracum-etl/fhir-gateway:v2.5.0
image: docker.miracum.org/miracum-etl/fhir-gateway:v2.9.0
restart: unless-stopped
ports:
- 18080:8080
@@ -16,13 +16,16 @@ services:
SERVICES_GPAS_DOMAINS_CASE: ${SERVICES_GPAS_DOMAINS_CASE:-PSN-REPO-CID}
SERVICES_LOINC_CONVERSIONS_URL: ${SERVICES_LOINC_CONVERSIONS_URL:-http://loinc-converter:8080/conversions}
SERVICES_LOINC_CONVERSIONS_HEALTHCHECK: ${SERVICES_LOINC_CONVERSIONS_HEALTHCHECK:-http://loinc-converter:8080/health}
FHIR_SYSTEMS_ENCOUNTERID: ${FHIR_SYSTEMS_ENCOUNTERID:-https://miracum.org/fhir/NamingSystem/identifier/EncounterId}
FHIR_SYSTEMS_PATIENTID: ${FHIR_SYSTEMS_PATIENTID:-https://miracum.org/fhir/NamingSystem/identifier/PatientId}
FHIR_SYSTEMS_REPORTID: "https://miracum.org/fhir/NamingSystem/identifier/ReportId"
depends_on:
- loinc-converter
- fhir-gateway-db
- gpas
fhir-gateway-db:
image: postgres:12.2
image: postgres:12.3
restart: unless-stopped
ports:
- 15432:5432
@@ -35,7 +38,7 @@ services:
loinc-converter:
restart: always
image: docker.miracum.org/miracum-etl/loinc-conversion:v1.8.2
image: docker.miracum.org/miracum-etl/loinc-conversion:v1.8.3
gpas:
image: tmfev/gpas:1.9.1
@@ -46,7 +49,7 @@ services:
- 18081:8080
gpasinit-pid:
image: curlimages/curl:7.69.1
image: curlimages/curl:7.71.0
command: |
-X POST
-H 'Content-Type:application/xml'
@@ -75,7 +78,7 @@ services:
- gpas
gpasinit-cid:
image: curlimages/curl:7.69.1
image: curlimages/curl:7.71.0
command: |
-X POST
-H 'Content-Type:application/xml'
fhir-to-i2b2/docker-compose.yml
+ 1
- 1
@@ -2,7 +2,7 @@ version: "3.7"
services:
fhirtoi2b2:
image: docker.miracum.org/miracum-etl/fhir-to-i2b2:v1.24.12
image: docker.miracum.org/miracum-etl/fhir-to-i2b2:v1.27.1
environment:
FHIR_SYSTEMS_ENCOUNTERID: ${FHIR_SYSTEMS_ENCOUNTERID:-https://miracum.org/fhir/NamingSystem/identifier/EncounterId}
FHIR_SYSTEMS_PATIENTID: ${FHIR_SYSTEMS_PATIENTID:-https://miracum.org/fhir/NamingSystem/identifier/PatientId}
lab-to-fhir/docker-compose.yml
+ 1
- 1
@@ -2,7 +2,7 @@ version: "3.7"
services:
labtofhir:
image: docker.miracum.org/miracum-etl/lab-to-fhir:v1.20.2
image: docker.miracum.org/miracum-etl/lab-to-fhir:v1.20.6
environment:
FHIR_URL: ${FHIR_URL:-http://fhir-gateway:8080/fhir}
FHIR_SYSTEMS_ENCOUNTERID: ${FHIR_SYSTEMS_ENCOUNTERID:-https://miracum.org/fhir/NamingSystem/identifier/EncounterId}
monitoring/docker-compose.yml
+ 1
- 1
@@ -8,7 +8,7 @@ services:
- "9091:9091"
prometheus:
image: prom/prometheus:v2.17.2
image: prom/prometheus:v2.19.2
restart: unless-stopped
ports:
- "9090:9090"
p21-to-fhir/docker-compose.yml
+ 5
- 2
@@ -2,10 +2,10 @@ version: "3.7"
services:
p21tofhir:
image: docker.miracum.org/miracum-etl/p21-to-fhir:v2.2.0
image: docker.miracum.org/miracum-etl/p21-to-fhir:2.10.2
environment:
FHIR_URL: ${FHIR_URL:-http://fhir-gateway:8080/fhir}
DATA_READFROMCSV: "false"
DATA_READFROMCSV: ${DATA_READFROMCSV:-false}
DATA_DB_INPUT_URL: ${DATA_DB_INPUT_URL:-jdbc:postgresql://staging-db:5432/staging}
DATA_DB_INPUT_USER: ${DATA_DB_INPUT_USER:-staging}
DATA_DB_INPUT_PASSWORD: ${POSTGRES_STAGING_PASSWORD:-postgres}
@@ -15,3 +15,6 @@ services:
FHIR_SYSTEMS_ENCOUNTERID: ${FHIR_SYSTEMS_ENCOUNTERID:-https://miracum.org/fhir/NamingSystem/identifier/EncounterId}
FHIR_SYSTEMS_PATIENTID: ${FHIR_SYSTEMS_PATIENTID:-https://miracum.org/fhir/NamingSystem/identifier/PatientId}
PROMETHEUS_PUSHGATEWAY_URL: ${PUSHGATEWAY_URL:-http://pushgateway:9091/}
volumes:
- ./input_data:/opt/p21tofhir/data